PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G025358.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family LBD
Protein Properties Length: 209aa    MW: 22839.1 Da    PI: 7.3634
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G025358.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.74.3e-292100194
                DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                           +C++C+vlr++C ++Cvl+ ++     p++q +++ +++k+FG+s ++++++a+p+++r+++++sl++eA+ r+ +Pv+Gavg++++++
  HL.SW.v1.0.G025358.1   2 SCNGCRVLRKGCGESCVLRSCLhwiesPEAQGNATLFLAKFFGRSDLMSFISAVPDHHRPALFQSLLFEACGRTVNPVNGAVGLLSSGN 90 
                           6**************************************************************************************** PP

                DUF260  85 qqleqlkael 94 
                           ++++q+++e+
  HL.SW.v1.0.G025358.1  91 WHVCQAAVET 100
                           ******9886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.6071107IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-242100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MSCNGCRVLR KGCGESCVLR SCLHWIESPE AQGNATLFLA KFFGRSDLMS FISAVPDHHR  60
PALFQSLLFE ACGRTVNPVN GAVGLLSSGN WHVCQAAVET ILCGGVLRPM QGGLLMQKLD  120
ESSDMLAVAG DTSSWPSSAY RYFPSLPSIY DPRQEQYYSG ARGSSSIFPM TEKLVWRDSI  180
SRSSEESVMT KSFGIGDHKE QKLLNLFV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010092590.12e-87hypothetical protein L484_000182
SwissprotQ9SN232e-62LBD38_ARATH; LOB domain-containing protein 38
TrEMBLW9SE372e-87W9SE37_9R
STRINGPOPTR_0002s12020.19e-69(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.11e-63LOB domain-containing protein 38